Function reference • Single Cell Pathway Analysis (SCPA)

All functions
`compare_pathways()`	Use SCPA to compare gene sets
`compare_sce()`	Use SCPA to compare pathways within a SingleCellExperiment object
`compare_seurat()`	Use SCPA to compare pathways within a Seurat object
`format_pathways()`	Format the output of msigdbr to use with SCPA
`get_paths()`	Convert gene sets to filtered pathway list
`parallel_comparison()`	Internal function for compare_pathways()
`pathway_matrices()`	Create pathway matrices from gene sets
`plot_heatmap()`	Plot a heatmap of qvals from SCPA
`plot_rank()`	Plot the rank of specific pathways from SCPA output
`random_cells()`	Randomly sample cells (columns)
`sce_extract()`	Extract data from a SingleCellExperiment object
`seurat_extract()`	Extract Data From A Seurat Object
`single_comparison()`	Internal function for compare_pathways()

Reference