Convert gene sets to filtered pathway list

Source: R/GetPaths.R

This function takes one of three inputs:

  1. csv file where pathway title is in the first column and subsequent columns contain genes of that pathway

  2. A gmt file

  3. A tidy formatted list where pathway name is contained in the first column and the genes of that pathway are in the second column

get_paths(pathway_filepath)

Arguments

pathway_filepath

filepath to csv or gmt file

Value

list of pathways with corresponding genes

Examples

if (FALSE) {
pathways <- get_paths(
     "Documents/gene_list.csv"
)
}